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I loafe and invite my soul. I lean and loafe at my ease observing a spear of summer grass. Nero Move It 2009 Pcl TearMy tongue, every atom of my blood, formd from this soil, this air. Born here of parents born here from parents the same, and their. I, now thirty seven years old in perfect health begin. Hoping to cease not till death. Creeds and schools in abeyance. Retiring back a while sufficed at what they are, but never forgotten. I harbor for good or bad, I permit to speak at every hazard. Nature without check with original energy. Houses and rooms are full of perfumes, the shelves are crowded with. I breathe the fragrance myself and know it and like it. The distillation would intoxicate me also, but I shall not let it. The atmosphere is not a perfume, it has no taste of the. It is for my mouth forever, I am in love with it. I will go to the bank by the wood and become undisguised and naked. I am mad for it to be in contact with me. The smoke of my own breath. Echoes, ripples, buzzd whispers, love root, silk thread, crotch and vine. My respiration and inspiration, the beating of my heart, the passing. The sniff of green leaves and dry leaves, and of the shore and. The sound of the belchd words of my voice loosd to the eddies of. A few light kisses, a few embraces, a reaching around of arms. The play of shine and shade on the trees as the supple boughs wag. The delight alone or in the rush of the streets, or along the fields. The feeling of health, the full noon trill, the song of me rising. Have you reckond a thousand acres much Have you practisd so long to learn to readHave you felt so proud to get at the meaning of poems Stop this day and night with me and you shall possess the origin of. You shall possess the good of the earth and sun, there are millions. You shall no longer take things at second or third hand, nor look through. You shall not look through my eyes either, nor take things from me. You shall listen to all sides and filter them from your self. I have heard what the talkers were talking, the talk of the. But I do not talk of the beginning or the end. There was never any more inception than there is now. Nor any more youth or age than there is now. And will never be any more perfection than there is now. Nor any more heaven or hell than there is now. Urge and urge and urge. Always the procreant urge of the world. Out of the dimness opposite equals advance, always substance and. Always a knit of identity, always distinction, always a breed of life. To elaborate is no avail, learnd and unlearnd feel that it is so. Sure as the most certain sure, plumb in the uprights, well. Stout as a horse, affectionate, haughty, electrical. I and this mystery here we stand. Clear and sweet is my soul, and clear and sweet is all that is not my soul. Lack one lacks both, and the unseen is proved by the seen. Till that becomes unseen and receives proof in its turn. Showing the best and dividing it from the worst age vexes age. Knowing the perfect fitness and equanimity of things, while they. I am silent, and go bathe and admire myself. Welcome is every organ and attribute of me, and of any man hearty and clean. Not an inch nor a particle of an inch is vile, and none shall be. I am satisfied I see, dance, laugh, sing. As the hugging and loving bed fellow sleeps at my side through the night. Leaving me baskets coverd with white towels swelling the house with. Shall I postpone my acceptation and realization and scream at my eyes. That they turn from gazing after and down the road. And forthwith cipher and show me to a cent. Exactly the value of one and exactly the value of two, and which is ahead Trippers and askers surround me. People I meet, the effect upon me of my early life or the ward and. I live in, or the nation. The latest dates, discoveries, inventions, societies, authors old and new. My dinner, dress, associates, looks, compliments, dues. The real or fancied indifference of some man or woman I love. The sickness of one of my folks or of myself, or ill doing or loss. Battles, the horrors of fratricidal war, the fever of doubtful news. These come to me days and nights and go from me again. But they are not the Me myself. Apart from the pulling and hauling stands what I am. Stands amused, complacent, compassionating, idle, unitary. Looks down, is erect, or bends an arm on an impalpable certain rest. Looking with side curved head curious what will come next. Both in and out of the game and watching and wondering at it. Backward I see in my own days where I sweated through fog with. I have no mockings or arguments, I witness and wait. I believe in you my soul, the other I am must not abase itself to you. And you must not be abased to the other. Loafe with me on the grass, loose the stop from your throat. Not words, not music or rhyme I want, not custom or lecture, not. Only the lull I like, the hum of your valved voice. I mind how once we lay such a transparent summer morning. How you settled your head athwart my hips and gently turnd over upon me. And parted the shirt from my bosom bone, and plunged your tongue. And reachd till you felt my beard, and reachd till you held my feet. Swiftly arose and spread around me the peace and knowledge that pass. And I know that the hand of God is the promise of my own. And I know that the spirit of God is the brother of my own. And that all the men ever born are also my brothers, and the women. And that a kelson of the creation is love. And limitless are leaves stiff or drooping in the fields. And brown ants in the little wells beneath them. And mossy scabs of the worm fence, heapd stones, elder, mullein and. A child said What is the grass How could I answer the child I do not know what it is any more than he. I guess it must be the flag of my disposition, out of hopeful green. Or I guess it is the handkerchief of the Lord. A scented gift and remembrancer designedly dropt. Bearing the owners name someway in the corners, that we may see. Whose Or I guess the grass is itself a child, the produced babe of the vegetation. Or I guess it is a uniform hieroglyphic. And it means, Sprouting alike in broad zones and narrow zones. Growing among black folks as among white. Kanuck, Tuckahoe, Congressman, Cuff, I give them the same, I. And now it seems to me the beautiful uncut hair of graves. Tenderly will I use you curling grass. It may be you transpire from the breasts of young men. It may be if I had known them I would have loved them. It may be you are from old people, or from offspring taken soon out. And here you are the mothers laps. This grass is very dark to be from the white heads of old mothers. Darker than the colorless beards of old men. Dark to come from under the faint red roofs of mouths. O I perceive after all so many uttering tongues. And I perceive they do not come from the roofs of mouths for nothing. I wish I could translate the hints about the dead young men and women. And the hints about old men and mothers, and the offspring taken. What do you think has become of the young and old men And what do you think has become of the women and childrenThey are alive and well somewhere. The smallest sprout shows there is really no death. And if ever there was it led forward life, and does not wait at the. And ceasd the moment life appeard. All goes onward and outward, nothing collapses. And to die is different from what any one supposed, and luckier. Has any one supposed it lucky to be bornI hasten to inform him or her it is just as lucky to die, and I know it. I pass death with the dying and birth with the new washd babe, and. And peruse manifold objects, no two alike and every one good. The earth good and the stars good, and their adjuncts all good. I am not an earth nor an adjunct of an earth. I am the mate and companion of people, all just as immortal and. They do not know how immortal, but I know. Every kind for itself and its own, for me mine male and female. For me those that have been boys and that love women. For me the man that is proud and feels how it stings to be slighted. For me the sweet heart and the old maid, for me mothers and the. For me lips that have smiled, eyes that have shed tears. For me children and the begetters of children. Undrape you are not guilty to me, nor stale nor discarded. I see through the broadcloth and gingham whether or no. And am around, tenacious, acquisitive, tireless, and cannot be shaken away. 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List of USB IDs Maintained by Stephen J. Gowdy If you have any new entries, please submit them via http or send. A complete list of system error codes, from code 1 through 15841. Here, too, are meanings for each system error code, plus other ways they may appear. Software Sleuthing HRESULTS FACILITYWIN3. This is page contains raw error codes. It is meant as a software developer reference, not a customer support site. Edit 672. 01. 5 Updated from the Windows. SDK. ERRORSUCCESS 0x. The operation completed successfully. ERRORINVALIDFUNCTION 0x. Incorrect function. ERRORFILENOTFOUND 0x. The system cannot find the file specified. ERRORPATHNOTFOUND 0x. The system cannot find the path specified. ERRORTOOMANYOPENFILES 0x. The system cannot open the file. ERRORACCESSDENIED 0x. Access is denied. EACCESSDENIED 0x. General access denied error ERRORINVALIDHANDLE 0x. The handle is invalid. EHANDLE 0x. 80. Invalid handle ERRORARENATRASHED 0x. The storage control blocks were destroyed. ERRORNOTENOUGHMEMORY 0x. Not enough storage is available to process this command. ERRORINVALIDBLOCK 0x. The storage control block address is invalid. ERRORBADENVIRONMENT 0x. A 1. 0The environment is incorrect. ERRORBADFORMAT 0x. B 1. 1An attempt was made to load a program with an incorrect format. ERRORINVALIDACCESS 0x. C 1. 2The access code is invalid. ERRORINVALIDDATA 0x. D 1. 3The data is invalid. ERROROUTOFMEMORY 0x. E 1. 4Not enough storage is available to complete this operation. EOUTOFMEMORY 0x. E 1. 4Ran out of memory ERRORINVALIDDRIVE 0x. F 1. 5The system cannot find the drive specified. ERRORCURRENTDIRECTORY 0x. The directory cannot be removed. ERRORNOTSAMEDEVICE 0x. The system cannot move the file to a different disk drive. ERRORNOMOREFILES 0x. There are no more files. ERRORWRITEPROTECT 0x. The media is write protected. ERRORBADUNIT 0x. The system cannot find the device specified. ERRORNOTREADY 0x. The device is not ready. ERRORBADCOMMAND 0x. The device does not recognize the command. ERRORCRC 0x. 80. Data error cyclic redundancy check. ERRORBADLENGTH 0x. The program issued a command but the command length is incorrect. ERRORSEEK 0x. 80. The drive cannot locate a specific area or track on the disk. ERRORNOTDOSDISK 0x. A 2. 6The specified disk or diskette cannot be accessed. ERRORSECTORNOTFOUND 0x. B 2. 7The drive cannot find the sector requested. ERROROUTOFPAPER 0x. C 2. 8The printer is out of paper. ERRORWRITEFAULT 0x. D 2. 9The system cannot write to the specified device. ERRORREADFAULT 0x. E 3. 0The system cannot read from the specified device. ERRORGENFAILURE 0x. F 3. 1A device attached to the system is not functioning. ERRORSHARINGVIOLATION 0x. The process cannot access the file because it is being used by another process. ERRORLOCKVIOLATION 0x. The process cannot access the file because another process has locked a portion of the file. ERRORWRONGDISK 0x. The wrong diskette is in the drive. Insert 2 Volume Serial Number 3 into drive 1. ERRORSHARINGBUFFEREXCEEDED 0x. Too many files opened for sharing. STRSAFEEENDOFFILE 0x. L ERRORHANDLEEOFERRORHANDLEEOF 0x. Reached the end of the file. ERRORHANDLEDISKFULL 0x. The disk is full. ERRORNOTSUPPORTED 0x. The request is not supported. ERRORREMNOTLIST 0x. Windows cannot find the network path. Verify that the network path is correct and the destination computer is not busy or turned off. If Windows still cannot find the network path, contact your network administrator. ERRORDUPNAME 0x. You were not connected because a duplicate name exists on the network. If joining a domain, go to System in Control Panel to change the computer name and try again. If joining a workgroup, choose another workgroup name. ERRORBADNETPATH 0x. The network path was not found. ERRORNETWORKBUSY 0x. The network is busy. ERRORDEVNOTEXIST 0x. The specified network resource or device is no longer available. ERRORTOOMANYCMDS 0x. The network BIOS command limit has been reached. ERRORADAPHDWERR 0x. A network adapter hardware error occurred. ERRORBADNETRESP 0x. A 5. 8The specified server cannot perform the requested operation. ERRORUNEXPNETERR 0x. B 5. 9An unexpected network error occurred. ERRORBADREMADAP 0x. C 6. 0The remote adapter is not compatible. ERRORPRINTQFULL 0x. D 6. 1The printer queue is full. ERRORNOSPOOLSPACE 0x. E 6. 2Space to store the file waiting to be printed is not available on the server. ERRORPRINTCANCELLED 0x. F 6. 3Your file waiting to be printed was deleted. ERRORNETNAMEDELETED 0x. The specified network name is no longer available. ERRORNETWORKACCESSDENIED 0x. Network access is denied. ERRORBADDEVTYPE 0x. The network resource type is not correct. ERRORBADNETNAME 0x. The network name cannot be found. ERRORTOOMANYNAMES 0x. The name limit for the local computer network adapter card was exceeded. ERRORTOOMANYSESS 0x. The network BIOS session limit was exceeded. ERRORSHARINGPAUSED 0x. The remote server has been paused or is in the process of being started. ERRORREQNOTACCEP 0x. No more connections can be made to this remote computer at this time because there are already as many connections as the computer can accept. ERRORREDIRPAUSED 0x. The specified printer or disk device has been paused. ERRORFILEEXISTS 0x. The file exists. ERRORCANNOTMAKE 0x. The directory or file cannot be created. ERRORFAILI2. 4 0x. Fail on INT 2. 4. ERROROUTOFSTRUCTURES 0x. Storage to process this request is not available. ERRORALREADYASSIGNED 0x. The local device name is already in use. ERRORINVALIDPASSWORD 0x. The specified network password is not correct. STRSAFEEINVALIDPARAMETER 0x. L ERRORINVALIDPARAMETERERRORINVALIDPARAMETER 0x. The parameter is incorrect. EINVALIDARG 0x. One or more arguments are invalid ERRORNETWRITEFAULT 0x. A write fault occurred on the network. ERRORNOPROCSLOTS 0x. The system cannot start another process at this time. ERRORTOOMANYSEMAPHORES 0x. Cannot create another system semaphore. ERROREXCLSEMALREADYOWNED 0x. The exclusive semaphore is owned by another process. ERRORSEMISSET 0x. The semaphore is set and cannot be closed. ERRORTOOMANYSEMREQUESTS 0x. The semaphore cannot be set again. ERRORINVALIDATINTERRUPTTIME 0x. Cannot request exclusive semaphores at interrupt time. ERRORSEMOWNERDIED 0x. The previous ownership of this semaphore has ended. ERRORSEMUSERLIMIT 0x. A 1. 06Insert the diskette for drive 1. ERRORDISKCHANGE 0x. B 1. 07The program stopped because an alternate diskette was not inserted. ERRORDRIVELOCKED 0x. C 1. 08The disk is in use or locked by another process. ERRORBROKENPIPE 0x. D 1. 09The pipe has been ended. ERROROPENFAILED 0x. E 1. 10The system cannot open the device or file specified. ERRORBUFFEROVERFLOW 0x. F 1. 11The file name is too long. ERRORDISKFULL 0x. There is not enough space on the disk. ERRORNOMORESEARCHHANDLES 0x. No more internal file identifiers available. ERRORINVALIDTARGETHANDLE 0x. The target internal file identifier is incorrect. ERRORINVALIDCATEGORY 0x. The IOCTL call made by the application program is not correct. ERRORINVALIDVERIFYSWITCH 0x. The verify on write switch parameter value is not correct. ERRORBADDRIVERLEVEL 0x. The system does not support the command requested. ERRORCALLNOTIMPLEMENTED 0x. This function is not supported on this system. ERRORSEMTIMEOUT 0x. The semaphore timeout period has expired. DXDIAGEINSUFFICIENTBUFFER 0x. A 1. 22HRESULTFROMWIN3. ERRORINSUFFICIENTBUFFERSTRSAFEEINSUFFICIENTBUFFER 0x. A 1. 220x. 7A 1. L ERRORINSUFFICIENTBUFFERERRORINSUFFICIENTBUFFER 0x. A 1. 22The data area passed to a system call is too small. ERRORINVALIDNAME 0x. B 1. 23The filename, directory name, or volume label syntax is incorrect. ERRORINVALIDLEVEL 0x. C 1. 24The system call level is not correct. ERRORNOVOLUMELABEL 0x. D 1. 25The disk has no volume label. ERRORMODNOTFOUND 0x. E 1. 26The specified module could not be found. ERRORPROCNOTFOUND 0x. F 1. 27The specified procedure could not be found. ERRORWAITNOCHILDREN 0x. There are no child processes to wait for. ERRORCHILDNOTCOMPLETE 0x. The 1 application cannot be run in Win. ERRORDIRECTACCESSHANDLE 0x. Attempt to use a file handle to an open disk partition for an operation other than raw disk IO. ERRORNEGATIVESEEK 0x. An attempt was made to move the file pointer before the beginning of the file. ERRORSEEKONDEVICE 0x. Free Porn Video Pornstars. Mallu Tube. Teen Nude Sex Party. Free Tight Sex Videos. httpspornolaba. mobi Barisal BM College XXX. Indian Cute baby sex nude video. Wap Toplist wap toplist Wap ranking Wapmaster site mobile wap toplist Free traffic wap traffic wap portal add your site world 1 toplist best toplist adult toplist free toplist WAP. Incest porn pic gay thumbnail sex gallery, rupe porn true grannny sex tube, incest porntubes galery sex big cock, incest sex sait full screen sex, rough incest scenes. 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Facebook gradually added support for students at various other universities, and eventually to high school students as well. Since 2. 00. 6, anyone who claims to be at least 1. Facebook, though variations exist in the minimum age requirement, depending on applicable local laws. 7 The Facebook name comes from the face book directories often given to United States university students. 8Facebook may be accessed by a large range of desktops, laptops, tablet computers, and smartphones over the Internet and mobile networks. After registering to use the site, users can create a user profile indicating their name, occupation, schools attended and so on. Users can add other users as friends, exchange messages, post status updates and digital photos, share digital videos and links, use various software applications apps, and receive notifications when others update their profiles or make posts. Additionally, users may join common interest user groups organized by workplace, school, hobbies or other topics, and categorize their friends into lists such as People From Work or Close Friends. In groups, editors can pin posts to top. Additionally, users can complain about or block unpleasant people. Because of the large volume of data that users submit to the service, Facebook has come under scrutiny for its privacy policies. Facebook makes most of its revenue from advertisements which appear onscreen, marketing access for its customers to its users and offering highly selective advertising opportunities. 9Facebook, Inc. IPO in February 2. On July 1. 3, 2. 01. Facebook became the fastest company in the Standard Poors 5. Index to reach a market cap of 2. Facebook has more than 2 billion monthly active users as of June 2. As of April 2. 01. Get the latest science news and technology news, read tech reviews and more at ABC News. Facebook was the most popular social networking site in the world, based on the number of active user accounts. 1. Facebook classifies users from the ages of 1. History. 20. 032. Thefacebook, Thiel investment, and name change. Zuckerberg wrote a program called Facemash in 2. Harvard University as a sophomore second year student. According to The Harvard Crimson, the site was comparable to Hot or Not and used photos compiled from the online facebooks of nine Houses, placing two next to each other at a time and asking users to choose the hotter person. 1. Facemash attracted 4. The Facemash site was quickly forwarded to several campus group list servers, but was shut down a few days later by the Harvard administration. Zuckerberg faced expulsion and was charged by the administration with breach of security, violating copyrights, and violating individual privacy. Ultimately, the charges were dropped. 1. Zuckerberg expanded on this initial project that semester by creating a social study tool ahead of an art history final exam. He uploaded all art images to a website, each of which was featured with a corresponding comments section, then shared the site with his classmates, and people started sharing notes. 1. Original layout and name of Thefacebook, 2. A face book is a student directory featuring photos and basic information. 1. In 2. 00. 3, there were no universal online facebooks at Harvard, with only paper sheets distributed1. Zuckerberg told the Crimson that Everyones been talking a lot about a universal face book within Harvard. I think its kind of silly that it would take the University a couple of years to get around to it. I can do it better than they can, and I can do it in a week. 1. In January 2. 00. Zuckerberg began writing code for a new website, known as The. Facebook, with the inspiration coming from an editorial in the Crimson about Facemash, stating that It is clear that the technology needed to create a centralized Website is readily available. On February 4, 2. Zuckerberg launched The. Facebook, originally located at thefacebook. Six days after the site launched, Harvard seniors Cameron Winklevoss, Tyler Winklevoss, and Divya Narendra accused Zuckerberg of intentionally misleading them into believing that he would help them build a social network called Harvard. Connection. com. They claimed that he was instead using their ideas to build a competing product. 2. The three complained to The Harvard Crimson and the newspaper began an investigation. They later filed a lawsuit against Zuckerberg, subsequently settling in 2. Facebooks IPO. 2. Membership was initially restricted to students of Harvard College within the first month, more than half the undergraduates at Harvard were registered on the service. 6Eduardo Saverin business aspects, Dustin Moskovitz programmer, Andrew Mc. Collum graphic artist, and Chris Hughes joined Zuckerberg to help promote the website. In March 2. 00. 4, Facebook expanded to the universities of Columbia, Stanford, and Yale. 2. It later opened to all Ivy League colleges, Boston University, New York University, MIT, and gradually most universities in the United States and Canada. 2. In mid 2. 00. 4, entrepreneur Sean Parkeran informal advisor to Zuckerbergbecame the companys president. 2. In June 2. 00. 4, Facebook moved its operations base to Palo Alto, California. 2. It received its first investment later that month from Pay. Pal co founder Peter Thiel. 2. In 2. 00. 5, the company dropped the from its name after purchasing the domain name facebook. US2. 00,0. 00. 3. The domain facebook. About. Face Corporation before the purchase. This website last appeared on April 8, 2. April 1. 0, 2. 00. August 4, 2. 00. 5, this domain gave a 4. In May 2. 00. 5, Accel Partners invested 1. Facebook, and Jim Breyer3. A high school version of the site was launched in September 2. Zuckerberg called the next logical step. 3. At the time, high school networks required an invitation to join. 3. Facebook also expanded membership eligibility to employees of several companies, including Apple Inc. Microsoft. 3. 62. Public access, Microsoft alliance and rapid growth. On September 2. 6, 2. Facebook was opened to everyone at least 1. In late 2. 00. 7, Facebook had 1. These started as group pages, but a new concept called company pages was planned. 4. Pages began rolling out for businesses in May 2. On October 2. 4, 2. Microsoft announced that it had purchased a 1. Facebook for 2. 40 million, giving Facebook a total implied value of around 1. Microsofts purchase included rights to place international advertisements on the social networking site. 4. In October 2. 00. Facebook announced that it would set up its international headquarters in Dublin, Ireland. 4. Almost a year later, in September 2. Facebook said that it had turned cash flow positive for the first time. 4. A January 2. 00. 9 Compete. Facebook the most used social networking service by worldwide monthly active users. 4. Entertainment Weekly included the site on its end of the decade best of list saying, How on earth did we stalk our exes, remember our co workers birthdays, bug our friends, and play a rousing game of Scrabulous before Facebook4. Traffic to Facebook increased steadily after 2. The company announced 5. July 2. 01. 0,4. Facebook daily, for an average of 3. A company representative called the milestone a quiet revolution. 4. In November 2. 01. Second. Market Inc. Facebooks value was 4. The company had slightly surpassed e. Bay to become the third largest American web company after Google and Amazon. In early 2. 01. 1, Facebook announced plans to move its headquarters to the former Sun Microsystems campus in Menlo Park, California. 5. In March 2. 01. 1, it was reported that Facebook was removing approximately 2. Release of statistics by Double. Click showed that Facebook reached one trillion page views in the month of June 2. Double. Click. 5. According to a Nielsen study, Facebook had in 2. U. S. behind Google. 5. IPO, lawsuits and one billionth user. Facebook eventually filed for an initial public offering on February 1, 2. Facebook held an initial public offering on May 1. The Best Hacking Tutorial Sites. Rating Any review of the best hacking sites wouldnt be complete without the inclusion of 2. First published in 1. POTS. 2. 60. 0 Enterprises has a variety of ventures in addition to the magazine, and its web presence is a little lightweight. 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What is this This document is intended to provide an overview of how one can use the RDKit functionality from Python. Its not comprehensive and its not a manual. Getting Started with the RDKit in Python The RDKit 2. What is thisThis document is intended to provide an overview of how one can use. RDKit functionality from Python. Its not comprehensive and its. If you find mistakes, or have suggestions for improvements, please. In particular, if you find yourself spending time working out how to. Contributing to the documentation is a great service. RDKit community and to your future self. Reading and Writing MoleculesReading single moleculesThe majority of the basic molecular functionality is found in module rdkit. Chem fromfutureimportprintfunction fromrdkitimport. Chem. Individual molecules can be constructed using a variety of approaches mChem. Mol. From. SmilesCc. Chem. Mol. From. Mol. Filedatainput. With. Mol. Dataopendatainput. Chem. Mol. From. Mol. Blockstring. With. Mol. DataAll of these functions return a Mol object on success mlt rdkit. Chem. rdchem. Mol object at 0x. or None on failure mChem. Mol. From. Mol. Filedatainvalid. None. True. An attempt is made to provide sensible error messages m. Chem. Mol. From. SmilesCOCCdisplays a message like 1. Explicitvalenceforatom1. Ogreaterthanpermitted and m. Chem. Mol. From. Smilesc. Cantkekulizemol. In each case the value None is returned m. None. True m. None. True. Reading sets of moleculesGroups of molecules are read using a Supplier for example, an SDMol. Supplier or a Smiles. Mol. Supplier supplChem. SDMol. Supplierdata5ht. Get. Num. Atoms. You can easily produce lists of molecules from a Supplier molsxforxinsuppl lenmols4or just treat the Supplier itself as a random access object suppl0. Get. Num. Atoms2. A good practice is to test each molecule to see if it was correctly read before working with it supplChem. SDMol. Supplierdata5ht. None continue. printmol. Get. Num. Atoms. An alternate type of Supplier, the Forward. SDMol. Supplier can be used to read from file like objects infopendata5ht. Chem. Forward. SDMol. Supplierinf formolinfsuppl. None continue. printmol. Get. Num. Atoms. This means that they can be used to read from compressed files importgzip infg Chem. Forward. SDMol. Supplierinf msxforxingzsupplifxisnot. None lenms1. Note that Forward. SDMol. Suppliers cannot be used as random access objects fsuppl0Traceback most recent call last. Type. Error Forward. SDMol. Supplier object does not support indexing. Writing moleculesSingle molecules can be converted to text using several functions present in the rdkit. Chem module. For example, for SMILES mChem. Mol. From. Mol. Filedatachiral. Chem. Mol. To. SmilesmCCOc. Chem. Mol. To. Smilesm,isomeric. SmilesTrueCCHOc. Note that the SMILES provided is canonical, so the output should be the same no matter how a particular molecule is input Chem. Mol. To. SmilesChem. Mol. From. SmilesC1CCCNC1c. Chem. Mol. To. SmilesChem. Mol. From. Smilesc. Chem. Mol. To. SmilesChem. Mol. From. Smilesn. If youd like to have the Kekule form of the SMILES, first Kekulize the molecule, then use the kekule. Smiles option Chem. Kekulizem Chem. Mol. To. Smilesm,kekule. SmilesTrueCCOC1CCCCC1Note as of this writing Aug 2. Smiles are not canonical. The limitation is not in the SMILES generation, but in the kekulization itself. MDL Mol blocks are also available m. Chem. Mol. From. SmilesC1. CCC1 printChem. Mol. To. Mol. Blockm. RDKit 4 4 0 0 0 0 0 0 0 0. V2. 00. 0 0. 0. 00. C 0 0 0 0 0 0 0 0 0 0 0 0 0. C 0 0 0 0 0 0 0 0 0 0 0 0 0. C 0 0 0 0 0 0 0 0 0 0 0 0 0. C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 3 4 1 0 4 1 1 0. M ENDTo include names in the mol blocks, set the molecules Name property m. Set. PropName,cyclobutane printChem. Mol. To. Mol. Blockm. RDKit 4 4 0 0 0 0 0 0 0 0. V2. 00. 0 0. 0. 00. C 0 0 0 0 0 0 0 0 0 0 0 0 0. C 0 0 0 0 0 0 0 0 0 0 0 0 0. C 0 0 0 0 0 0 0 0 0 0 0 0 0. C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 3 4 1 0 4 1 1 0. M ENDIn order for atom or bond stereochemistry to be recognised correctly by most. Mol block have atomic coordinates. Its also convenient for many reasons, such as drawing the molecules. Coordinates can be generated using functionality in the. Chem. All. Chem module see the Chem vs All. Chem section for. You can either include 2. D coordinates i. Chemimport. All. Chem All. Chem. Compute. 2DCoordsm. Chem. Mol. To. Mol. Blockm. 2cyclobutane RDKit 2. D 4 4 0 0 0 0 0 0 0 0. V2. 00. 0 1. 0. 60. C 0 0 0 0 0 0 0 0 0 0 0 0 0. C 0 0 0 0 0 0 0 0 0 0 0 0 1. C 0 0 0 0 0 0 0 0 0 0 0 0 0. C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 3 4 1 0 4 1 1 0. M ENDOr you can add 3. D coordinates by embedding the molecule were using the ETKDG. All. Chem. Embed. Moleculem. 2,All. Chem. ETKDG0 printChem. Mol. To. Mol. Blockm. RDKit 3. D 4 4 0 0 0 0 0 0 0 0. V2. 00. 0 0. 8. C 0 0 0 0 0 0 0 0 0 0 0 0 0. C 0 0 0 0 0 0 0 0 0 0 0 0 0. C 0 0 0 0 0 0 0 0 0 0 0 0 0. C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 3 4 1 0 4 1 1 0. M ENDTo get good 3. D conformations, its almost always a good idea to add. Chem. Add. Hsm. 2 All. Chem. Embed. Moleculem. All. Chem. ETKDG0. These can then be removed m. Chem. Remove. Hsm. Chem. Mol. To. Mol. Blockm. 3cyclobutane RDKit 3. D 4 4 0 0 0 0 0 0 0 0. V2. 00. 0 0. 3. 49. C 0 0 0 0 0 0 0 0 0 0 0 0 0. C 0 0 0 0 0 0 0 0 0 0 0 0 0. C 0 0 0 0 0 0 0 0 0 0 0 0 0. C 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 3 4 1 0 4 1 1 0. M ENDIf youd like to write the molecules to a file, use Python file objects printChem. Mol. To. Mol. Blockm. Writing sets of moleculesMultiple molecules can be written to a file using an SDWriter object wChem. SDWriterdatafoo. An SDWriter can also be initialized using a file like object fromrdkit. String. IO sioString. IO wChem. SDWritersio forminmols w. RDKit 3. D 2. V2. 00. 0 2. 3. 20. C 0 0 0 0 0 0 0 0 0 0 0 0 1. C 0 0 0 0 0 0 0 0 0 0 0 0. M ENDOther available Writers include the Smiles. Writer and the TDTWriter. Working with MoleculesLooping over Atoms and BondsOnce you have a molecule, its easy to loop over its atoms and bonds mChem. Mol. From. SmilesC1. OC1 foratominm. Get. Atoms. printatom. Get. Atomic. Num. Get. Bonds0. Get. Bond. TypeSINGLEYou can also request individual bonds or atoms m. Get. Atom. With. Idx0. Get. SymbolC m. Get. Atom. With. Idx0. Get. Explicit. Valence2 m. Get. Bond. With. Idx0. Get. Begin. Atom. Idx0 m. Get. Bond. With. Idx0. Get. End. Atom. Idx1 m. Get. Bond. Between. Atoms0,1. Get. Bond. Typerdkit. Chem. Bond. Type. SINGLEAtoms keep track of their neighbors atomm. Get. Atom. With. Idx0 x. Get. Atomic. Numforxinatom. Get. Neighbors8, 6 lenatom. Get. Neighbors 1. Get. Bonds2. Ring InformationAtoms and bonds both carry information about the molecules rings mChem. Mol. From. SmilesOC1. C2. C1. CC2 m. Get. Atom. With. Idx0. Is. In. RingFalse m. Get. Atom. With. Idx1. Is. In. RingTrue m. Get. Atom. With. Idx2. Is. In. Ring. Size3True m. Get. Atom. With. Idx2. Is. In. Ring. Size4True m. Get. Atom. With. Idx2. Is. In. Ring. Size5False m. Get. Bond. With. Idx1. Is. In. Ring. Size3True m. Get. Bond. With. Idx1. Is. In. RingTrue. But note that the information is only about the smallest rings m. Get. Atom. With. Idx1. Is. In. Ring. Size5False. More detail about the smallest set of smallest rings SSSR is available ssrChem. Get. Symm. SSSRm lenssr2 listssr01, 2, 3 listssr14, 5, 2, 3As the name indicates, this is a symmetrized SSSR if you are interested in the number of true SSSR, use the Get. |
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